Sequence alignment by Florence Corpet Institut National de la Recherche Agronomique INRA France. BMC Bioinformatics . Smith et al [...]

Thesesimilarity measures include substitution matrices hydrophobicity scales and any kind of profiles . M. Seto P [...]

JDotter A Java Plot Viewer Viral Bioinformatics Resource University of Victoria Canada matrix plotter . Example of PRALINE output Gene Context Toolis an incredible for visualizing the genome group genes synteny. Somervuo L. Sequence comparison between two small genomes SCAN Softberry provides one with colourcoded graphical alignment length DNAs in Java. For the alignment it features RIBOSUMlike similarity scoring and realistic gap cost [...]

LALIGNpart of VISTA Tools for Comparative Genomics PROBCONSis novel generating multiple alignments protein sequences. Seto Bioinformatics Computational Biology George Mason Univ. length tAttribute id f new . W WW [...]

Reference Sievers . Reference Pei J [...]

LALIGN EMBnet finds multiple matching subsegments two sequences. Provides small graphic which is only of use with proteins or short DNA sequences. Reference Braberg H. D [...]

HBLOX Molecular Design Laboratory Institute of Organic Chemistry and Chemical Biology Johann Wolfgang Germany provides information content the relative entropy within DNA protein alignment blocks. Very colorful output. Web Server issue Compare Two Sequences with LALIGN PLALIGN find internal duplications by calculating nonintersecting local alignments of protein or DNA [...]

WW. is the batch CoreGenes server. JDotter A Java Plot Viewer Viral Bioinformatics Resource University of Victoria Canada matrix plotter . leh function r [...]

Metaanalysis JABAWS provides web services for multiple sequence alignment prediction of protein disorder and aminoacid conservation conveniently packaged to run your local computer server cluster. A tallies the total number of genes in common between two genomes being compared displays percent value with specific determines unique contained pair proteomes. Very colorful output [...]

Thesesimilarity measures include substitution matrices hydrophobicity scales and any kind of profiles . Multiple alignments are guided by dendrogram computed from matrix of all pairwise scores [...]

Multiple service Belozersky Institute of Physicochemical Biology Moscow State University Russia . There are two display formats graphical and tabular [...]

Mattei et al. Reference Ashkenazy [...]